de.mdc-berlin / cellsketch-add-mask / 0.1.0

CellSketch: Add mask

This solution adds a mask to an existing CellSketch project.
Citation Müller, D. Schmidt, C. S. Xu, S. Pang, J. V. D’Costa, S. Kretschmar, C. Münster, T. Kurth, F. Jug, M. Weigert, H. F. Hess, M. Solimena; 3D FIB-SEM reconstruction of microtubule–organelle interaction in whole primary mouse β cells. J Cell Biol 1 February 2021; 220 (2): e202010039.
Solution written by
Deborah Schmidt


The CellSketch project to be opened (.n5). (default value: PARAMETER_VALUE)
The dataset file (3D) (default value: PARAMETER_VALUE)
The name of the dataset (default value: PARAMETER_VALUE)
Scale factor X for input dataset (default value: 1)
Scale factor Y of input dataset (default value: 1)
Scale factor Z of input dataset (default value: 1)
Color of dataset in hex (i.e. #ffff00) (default value: #ffffff)
Analyze connection to filaments ends (default value: 0)
Threshold to count filament ends as connected in um (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.