Catalog
About
Image data analysis solutions
Curated by Helmholtz Imaging
de.mdc-berlin
/
cellsketch-mesh-export
/ 0.1.0
CellSketch: Export masks and labelmaps as meshes
VTK based mesh generation from pixel data, exports all masks and labelmaps from CellSketch project as meshes.
Solution written by
Deborah Schmidt
Arguments
--project
The CellSketch project (ends with .n5) (default value: PARAMETER_VALUE)
--include
List of names of elements which should be loaded, comma separated (default value: PARAMETER_VALUE)
--exclude
List of names of elements which should not be loaded, comma separated (default value: PARAMETER_VALUE)
--headless
Do not display mesh after processing it. Set this to true if you run into memory issues. (default value: 0)
Usage instructions
Please follow
this link
for details on how to install and run this solution.