Scikit based mesh generation from pixel data, either saved as STL file or displayed via vtkplotlib.
Solution written by
Deborah Schmidt
Arguments
--input
The input image (TIF, 3D, single channel). (default value: PARAMETER_VALUE)
--gauss_sigma
The sigma of the gaussian blur applied before generating the mesh (optional). (default value: 0)
--gauss_threshold
Threshold used before applying the gauss filter. If not provided, no threshold is performed (optional). (default value: PARAMETER_VALUE)
--mesh_threshold
There value where background and foreground divide when the mesh is generated. If not provided, the average of min and max of the dataset is used (optional). (default value: PARAMETER_VALUE)
--mesh_step_size
The voxel step size when generating a mesh from the volume (optional). (default value: 1)
--output
The location where the output STL file is supposed to be stored at (for example /home/user/output.stl). In case this argument is not provided, the mesh will only be displayed. (default value: PARAMETER_VALUE)
Usage instructions
Please follow this link for details on how to install and run this solution.
