A Solution to run the polarityjam feature extraction pipeline
A Solution to run the polarityjam Feature Extraction Pipeline.
Tags
template
Solution written by
Lucas Rieckert
Jan Philipp Albrecht
License of solution
UNLICENSE
Arguments
--run_command
How do you want to run polarityjam? run for single tiff file,
run-stack for a directory containing multiple tiff files, run-key for a csv
file containing a list of directorys containing tiff files or test for the test-suit (default value: run)
--input_file
Path to the input tiff file (or directory of tiff files for run-stack). (default value: PARAMETER_VALUE)
--parameter_file
Path to the parameter file. (default value: PARAMETER_VALUE)
--output_path
Path to the directory where the output will get saved. (default value: PARAMETER_VALUE)
--filename_prefix
Optional file prefix to rename the input files. (default value: PARAMETER_VALUE)
--key_csv
CSV file containing the keys for the input. (default value: PARAMETER_VALUE)
Usage instructions
Please follow this link for details on how to install and run this solution.
